Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A060SIM4Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family. (279 aa)    
Predicted Functional Partners:
A0A060SJP9
Carboxypeptidase; Belongs to the peptidase S10 family.
   
 0.680
A0A060S9V4
Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family.
     
  0.612
A0A060SN16
P/Homo B domain-containing protein.
    
 0.570
A0A060SHG5
Uncharacterized protein; Belongs to the peptidase S10 family.
   
 0.544
A0A060SPV3
Carboxypeptidase; Belongs to the peptidase S10 family.
   
 0.544
A0A060SW06
Carboxypeptidase; Belongs to the peptidase S10 family.
   
 0.544
A0A060SIT8
Carboxypeptidase; Belongs to the peptidase S10 family.
   
 0.524
A0A060SQX9
Erf4 domain-containing protein.
  
 
  0.455
A0A060SWK7
Phosphotransferase.
     
  0.450
A0A060S9P3
Uncharacterized protein.
    
  0.440
Your Current Organism:
Trametes cinnabarina
NCBI taxonomy Id: 5643
Other names: Pycnoporus cinnabarinus, T. cinnabarina, Trametes cinnabarina (Jacq. : Fr.) Fr.
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