Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A060SIM6Uncharacterized protein. (106 aa)    
Predicted Functional Partners:
A0A060S6I2
Uncharacterized protein.
   
 0.999
A0A060S6V7
Ribosomal_L7Ae domain-containing protein.
   
 0.999
A0A060SAD7
Uncharacterized protein.
   
 0.999
A0A060SJU0
Uncharacterized protein.
   
 0.999
A0A060SM28
Ribosomal_L18_c domain-containing protein.
   
 0.999
A0A060SNW9
Ribosomal_L7Ae domain-containing protein.
   
 0.999
A0A060SRB2
60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.
   
 0.999
A0A060SS93
Uncharacterized protein.
   
 0.999
A0A060SSS3
Uncharacterized protein.
   
 0.999
A0A060ST07
Uncharacterized protein.
   
 0.999
Your Current Organism:
Trametes cinnabarina
NCBI taxonomy Id: 5643
Other names: Pycnoporus cinnabarinus, T. cinnabarina, Trametes cinnabarina (Jacq. : Fr.) Fr.
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