Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A060SJS4Uncharacterized protein. (272 aa)    
Predicted Functional Partners:
A0A060S2T5
Ubiquitin carboxyl-terminal hydrolase.
   
 
 0.733
A0A060SUW5
40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.
   
   0.690
A0A060SM31
Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.
   
   0.645
A0A060S3H6
40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.
    
 
 0.636
A0A060S7F5
OTU domain-containing protein.
    
 
 0.616
A0A060SL80
RBR-type E3 ubiquitin transferase.
    
  0.615
NIP1
Eukaryotic translation initiation factor 3 subunit C; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.
   
   0.613
A0A060SI87
Uncharacterized protein.
   
   0.607
A0A060S2K7
HECT domain-containing protein.
      
 0.594
A0A060S3G7
Bms1-type G domain-containing protein.
   
   0.594
Your Current Organism:
Trametes cinnabarina
NCBI taxonomy Id: 5643
Other names: Pycnoporus cinnabarinus, T. cinnabarina, Trametes cinnabarina (Jacq. : Fr.) Fr.
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