STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A060SM59Uncharacterized protein. (576 aa)    
Predicted Functional Partners:
A0A060SBZ9
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
   
 0.956
A0A060SDC3
Hist_deacetyl domain-containing protein.
   
 0.925
A0A060SEB9
Hist_deacetyl domain-containing protein.
   
 0.925
A0A060SXK1
Hist_deacetyl domain-containing protein.
   
 0.925
A0A060SNM5
Uncharacterized protein.
    
 
 0.882
A0A060SPN9
PHD-type domain-containing protein.
    
 
 0.882
A0A060S939
WD_REPEATS_REGION domain-containing protein.
  
 0.876
A0A060S418
Uncharacterized protein.
   
 0.875
A0A060SB05
Uncharacterized protein.
   
 0.875
A0A060SEM7
mRNA_triPase domain-containing protein.
   
 0.875
Your Current Organism:
Trametes cinnabarina
NCBI taxonomy Id: 5643
Other names: Pycnoporus cinnabarinus, T. cinnabarina, Trametes cinnabarina (Jacq. : Fr.) Fr.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.