A0A060SPL9 protein (Trametes cinnabarina) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A060SPL9

Glyco_hydro_15 domain-containing protein. (255 aa)

Predicted Functional Partners:

A0A060SM31

0.970

A0A060SM28

0.953

A0A060SU45

0.950

A0A060S246

0.944

A0A060SAJ3

0.942

A0A060SSS3

0.942

A0A060ST07

0.938

A0A060S7Y4

0.936

A0A060S423

0.932

A0A060SCG4

0.924

Your Current Organism:

Trametes cinnabarina

NCBI taxonomy Id: 5643
Other names: Pycnoporus cinnabarinus, T. cinnabarina, Trametes cinnabarina (Jacq. : Fr.) Fr.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A060S246	A0A060S7Y4	KOW domain-containing protein.	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	0.998
A0A060S246	A0A060SAJ3	KOW domain-containing protein.	KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family.	0.999
A0A060S246	A0A060SM28	KOW domain-containing protein.	Ribosomal_L18_c domain-containing protein.	0.999
A0A060S246	A0A060SM31	KOW domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	0.999
A0A060S246	A0A060SPL9	KOW domain-containing protein.	Glyco_hydro_15 domain-containing protein.	0.944
A0A060S246	A0A060SSS3	KOW domain-containing protein.	Uncharacterized protein.	0.999
A0A060S246	A0A060ST07	KOW domain-containing protein.	Uncharacterized protein.	0.999
A0A060S246	A0A060SU45	KOW domain-containing protein.	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	0.999
A0A060S423	A0A060SCG4	Glucose-6-phosphate isomerase; Belongs to the GPI family.	Fructose-bisphosphate aldolase; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis; Belongs to the class II fructose-bisphosphate aldolase family.	0.973
A0A060S423	A0A060SM31	Glucose-6-phosphate isomerase; Belongs to the GPI family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	0.789
A0A060S423	A0A060SPL9	Glucose-6-phosphate isomerase; Belongs to the GPI family.	Glyco_hydro_15 domain-containing protein.	0.932
A0A060S7Y4	A0A060S246	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	KOW domain-containing protein.	0.998
A0A060S7Y4	A0A060SAJ3	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family.	0.999
A0A060S7Y4	A0A060SM28	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	Ribosomal_L18_c domain-containing protein.	0.999
A0A060S7Y4	A0A060SM31	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	0.999
A0A060S7Y4	A0A060SPL9	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	Glyco_hydro_15 domain-containing protein.	0.936
A0A060S7Y4	A0A060SSS3	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	Uncharacterized protein.	0.999
A0A060S7Y4	A0A060ST07	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	Uncharacterized protein.	0.998
A0A060S7Y4	A0A060SU45	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	0.999
A0A060SAJ3	A0A060S246	KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family.	KOW domain-containing protein.	0.999