A0A060SRD4 protein (Trametes cinnabarina) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A060SRD4

Methyltransf_2 domain-containing protein. (451 aa)

Predicted Functional Partners:

A0A060S5W4

0.845

A0A060SCT4

0.845

A0A060SDI7

0.845

A0A060SRL9

0.837

A0A060S8U2

0.802

A0A060SIL2

0.802

A0A060SJB0

0.802

A0A060SLQ8

0.802

A0A060SS64

0.802

A0A060SUW3

0.802

Your Current Organism:

Trametes cinnabarina

NCBI taxonomy Id: 5643
Other names: Pycnoporus cinnabarinus, T. cinnabarina, Trametes cinnabarina (Jacq. : Fr.) Fr.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A060S5W4	A0A060SRD4	N-acetyltransferase domain-containing protein.	Methyltransf_2 domain-containing protein.	0.845
A0A060S5W4	A0A060SRL9	N-acetyltransferase domain-containing protein.	Uncharacterized protein.	0.845
A0A060S8U2	A0A060SJB0	Uncharacterized protein.	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	0.545
A0A060S8U2	A0A060SRD4	Uncharacterized protein.	Methyltransf_2 domain-containing protein.	0.802
A0A060S8U2	A0A060SRL9	Uncharacterized protein.	Uncharacterized protein.	0.802
A0A060SCT4	A0A060SRD4	Glucosamine 6-phosphate N-acetyltransferase; Belongs to the acetyltransferase family. GNA1 subfamily.	Methyltransf_2 domain-containing protein.	0.845
A0A060SCT4	A0A060SRL9	Glucosamine 6-phosphate N-acetyltransferase; Belongs to the acetyltransferase family. GNA1 subfamily.	Uncharacterized protein.	0.845
A0A060SDI7	A0A060SRD4	N-acetyltransferase domain-containing protein.	Methyltransf_2 domain-containing protein.	0.845
A0A060SDI7	A0A060SRL9	N-acetyltransferase domain-containing protein.	Uncharacterized protein.	0.845
A0A060SIL2	A0A060SJB0	Uncharacterized protein.	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	0.545
A0A060SIL2	A0A060SRD4	Uncharacterized protein.	Methyltransf_2 domain-containing protein.	0.802
A0A060SIL2	A0A060SRL9	Uncharacterized protein.	Uncharacterized protein.	0.802
A0A060SJB0	A0A060S8U2	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	Uncharacterized protein.	0.545
A0A060SJB0	A0A060SIL2	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	Uncharacterized protein.	0.545
A0A060SJB0	A0A060SLQ8	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.545
A0A060SJB0	A0A060SRD4	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	Methyltransf_2 domain-containing protein.	0.802
A0A060SJB0	A0A060SRL9	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	Uncharacterized protein.	0.802
A0A060SJB0	A0A060SS64	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	Uncharacterized protein.	0.545
A0A060SJB0	A0A060SUW3	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.545
A0A060SLQ8	A0A060SJB0	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	0.545