STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SBV49246.1Hypothetical protein. (103 aa)    
Predicted Functional Partners:
SBV49247.1
Hypothetical protein.
 
     0.888
SBV49251.1
Hypothetical protein; Belongs to the UbiA prenyltransferase family.
 
     0.841
SBV49249.1
Short chain dehydrogenase.
 
     0.802
SBV49248.1
NAD dependent epimerase/dehydratase/dehydrogenase.
 
     0.793
SBV49250.1
Oxidoreductase.
 
     0.786
SBV53238.1
Hypothetical protein.
  
     0.545
SBV49252.1
Hypothetical protein.
 
  
 0.541
SBV49245.1
Putative membrane protein.
       0.474
SBV50200.1
Putative type III effector protein XopAD.
 
     0.459
SBV51006.1
O-antigen biosynthesis protein.
  
 
 0.429
Your Current Organism:
Xanthomonas bromi
NCBI taxonomy Id: 56449
Other names: ICMP 12545, LMG 947, LMG:947, X. bromi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.