STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SBV52319.1Acetyltransferase. (157 aa)    
Predicted Functional Partners:
SBV49815.1
Malate dehydrogenase (oxaloacetate-decarboxylating).
    
 0.678
SBV50837.1
Glutamate synthase subunit alpha.
   
 
 0.642
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.635
SBV52128.1
Indolepyruvate ferredoxin oxidoreductase.
    
  0.612
SBV50054.1
P-protein.
    
  0.608
SBV49259.1
Mannose-1-phosphate guanylyltransferase-mannose-6-phosphate isomerase; Belongs to the mannose-6-phosphate isomerase type 2 family.
    
 0.607
SBV50568.1
Hypothetical protein.
  
 
 0.592
SBV50570.1
Iron transporter.
  
 
 0.592
rep
ATP-dependent DNA helicase; Rep helicase is a single-stranded DNA-dependent ATPase involved in DNA replication; it can initiate unwinding at a nick in the DNA. It binds to the single-stranded DNA and acts in a progressive fashion along the DNA in the 3' to 5' direction.
       0.570
guaB
IMP dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
   
 0.531
Your Current Organism:
Xanthomonas bromi
NCBI taxonomy Id: 56449
Other names: ICMP 12545, LMG 947, LMG:947, X. bromi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.