STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SBV52688.1Membrane protein. (292 aa)    
Predicted Functional Partners:
SBV52689.1
Hypothetical protein.
 
     0.884
SBV52692.1
Type VI secretion-associated protein.
 
   
 0.871
SBV52691.1
Hypothetical protein.
 
   
 0.870
SBV53171.1
Hypothetical protein.
 
   
 0.793
SBV52506.1
Hypothetical protein.
 
   
 0.791
SBV53228.1
Hypothetical protein.
 
     0.791
SBV52693.1
OmpA family protein.
 
   
 0.788
SBV52694.1
Hypothetical protein.
 
     0.786
SBV53227.1
Hypothetical protein.
 
     0.776
SBV53232.1
Membrane protein.
 
     0.775
Your Current Organism:
Xanthomonas bromi
NCBI taxonomy Id: 56449
Other names: ICMP 12545, LMG 947, LMG:947, X. bromi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.