STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SBV52736.1Protocatechuate 3,4-dioxygenase subunit beta. (245 aa)    
Predicted Functional Partners:
SBV52737.1
Protocatechuate 3,4-dioxygenase subunit alpha.
 
  
 
0.996
SBV52738.1
3-carboxy-cis,cis-muconate cycloisomerase.
 
 
 0.986
SBV52725.1
4-hydroxybenzoate 3-monooxygenase.
 
  
 0.977
SBV52739.1
3-oxoadipate enol-lactonase.
 
 
 0.945
SBV52740.1
4-carboxymuconolactone decarboxylase.
 
 
 0.908
SBV52733.1
Glutaconate CoA transferase subunit A.
 
 
 0.842
SBV52734.1
Glutaconate CoA transferase subunit B.
 
 
 0.840
SBV52735.1
Beta-ketoadipyl CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
     
 0.710
SBV52741.1
Transcriptional regulator.
 
   
 0.630
SBV50997.1
Ring hydroxylating dioxygenase subunit alpha.
 
 
 0.569
Your Current Organism:
Xanthomonas bromi
NCBI taxonomy Id: 56449
Other names: ICMP 12545, LMG 947, LMG:947, X. bromi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.