STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SBV52793.1Hypothetical protein. (303 aa)    
Predicted Functional Partners:
SBV52794.1
Hypothetical protein; Belongs to the UPF0225 family.
 
     0.635
SBV50407.1
Peptidase Do; Belongs to the peptidase S1C family.
   
 
 0.578
SBV51883.1
Periplasmic protease; Belongs to the peptidase S1C family.
   
 
 0.578
SBV49569.1
Colicin V production protein.
    
 
 0.575
SBV50835.1
Trypsin-like peptidase domain.
    
 
 0.575
SBV50925.1
Siroheme synthase.
    
 0.562
SBV52543.1
Siroheme synthase; Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD-dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme. Belongs to the precorrin methyltransferase family. In the N-terminal section; belongs to the precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase family.
    
 0.562
pheT
phenylalanyl-tRNA synthetase, beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
     
 0.489
SBV50931.1
Molybdopterin biosynthesis protein MoeB.
  
  
 0.486
SBV50918.1
uroporphyrinogen-III C-methyltransferase.
    
  0.482
Your Current Organism:
Xanthomonas bromi
NCBI taxonomy Id: 56449
Other names: ICMP 12545, LMG 947, LMG:947, X. bromi
Server load: low (28%) [HD]