STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJC44426.1Iron transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (585 aa)    
Predicted Functional Partners:
AJC44425.1
Diaminopimelate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.957
AJC44428.1
Siderophore biosynthesis protein, IucA/IucC family; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.953
AJC44429.1
Carboxylate--amine ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.952
AJC44427.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.941
AJC44430.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.797
AJC44424.1
Starvation-inducible protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.608
AJC45080.1
Polysaccharide biosynthesis protein GumF; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.603
AJC45277.1
Carbohydrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.581
AJC44431.1
4-hydroxy-2-oxovalerate aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HpcH/HpaI aldolase family.
 
    0.565
AJC45976.1
Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.494
Your Current Organism:
Xanthomonas sacchari
NCBI taxonomy Id: 56458
Other names: CFBP 4641, ICMP 16916, LMG 471, LMG:471, X. sacchari
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.