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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJC44503.1DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1157 aa)    
Predicted Functional Partners:
AJC44501.1
SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.968
AJC47426.1
Specificity determinant HsdS; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.895
AJC45600.1
Restriction endonuclease subunit M; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.863
AJC45599.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.829
AJC44502.1
Cell division protein Fic; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.631
AJC46582.1
Restriction endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.487
vapC
DNA-binding protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
     0.410
AJC47537.1
Restriction endonuclease subunit R; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.403
Your Current Organism:
Xanthomonas sacchari
NCBI taxonomy Id: 56458
Other names: CFBP 4641, ICMP 16916, LMG 471, LMG:471, X. sacchari
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