Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AJC44629.1Hemolysin secretion protein D; Derived by automated computational analysis using gene prediction method: Protein Homology. (473 aa)    
Predicted Functional Partners:
AJC47448.1
Peptidase C39; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.992
AJC47227.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.942
AJC44631.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.882
AJC47233.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.741
lapB
Tetratricopeptide repeat protein; Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane; Belongs to the LapB family.
      
 0.514
AJC46430.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.466
AJC44992.1
RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.432
AJC45144.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.432
AJC45197.1
Multidrug RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.432
AJC45261.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.432
Your Current Organism:
Xanthomonas sacchari
NCBI taxonomy Id: 56458
Other names: CFBP 4641, ICMP 16916, LMG 471, LMG:471, X. sacchari
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