Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AJC44760.1Mg-protoporphyrin IX monomethyl ester oxidative cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (502 aa)    
Predicted Functional Partners:
AJC47464.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.795
AJC44759.1
Radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.770
AJC47462.1
Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.719
AJC45367.1
Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.641
AJC44762.1
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.529
AJC44761.1
Serine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.512
AJC46180.1
Peptidase S53; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.493
AJC47459.1
Transglutaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.473
AJC44416.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.418
AJC44516.1
Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.416
Your Current Organism:
Xanthomonas sacchari
NCBI taxonomy Id: 56458
Other names: CFBP 4641, ICMP 16916, LMG 471, LMG:471, X. sacchari
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