AJC44799.1 protein (Xanthomonas sacchari) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

AJC44799.1

Two-component system sensor protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (416 aa)

Predicted Functional Partners:

AJC44800.1

0.964

AJC47622.1

0.885

AJC47050.1

0.846

AJC46298.1

0.831

AJC44481.1

0.812

AJC47240.1

0.811

phoB

0.808

AJC45610.1

0.795

AJC45823.1

0.792

AJC46341.1

0.792

Your Current Organism:

Xanthomonas sacchari

NCBI taxonomy Id: 56458
Other names: CFBP 4641, ICMP 16916, LMG 471, LMG:471, X. sacchari

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJC44481.1	AJC44799.1	SB85_00490	SB85_02485	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component system sensor protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.812
AJC44481.1	AJC45610.1	SB85_00490	SB85_07305	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.906
AJC44481.1	AJC46341.1	SB85_00490	SB85_11790	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.736
AJC44481.1	AJC47622.1	SB85_00490	SB85_11795	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.784
AJC44799.1	AJC44481.1	SB85_02485	SB85_00490	Two-component system sensor protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.812
AJC44799.1	AJC44800.1	SB85_02485	SB85_02490	Two-component system sensor protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.964
AJC44799.1	AJC45610.1	SB85_02485	SB85_07305	Two-component system sensor protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.795
AJC44799.1	AJC45823.1	SB85_02485	SB85_08595	Two-component system sensor protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.792
AJC44799.1	AJC46298.1	SB85_02485	SB85_11525	Two-component system sensor protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.831
AJC44799.1	AJC46341.1	SB85_02485	SB85_11790	Two-component system sensor protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.792
AJC44799.1	AJC47050.1	SB85_02485	SB85_16220	Two-component system sensor protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.846
AJC44799.1	AJC47240.1	SB85_02485	SB85_17290	Two-component system sensor protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.811
AJC44799.1	AJC47622.1	SB85_02485	SB85_11795	Two-component system sensor protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.885
AJC44799.1	phoB	SB85_02485	SB85_07795	Two-component system sensor protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator PhoB; Two component response regulator for the phosphate regulon; PhoR phosphorylates PhoB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.808
AJC44800.1	AJC44799.1	SB85_02490	SB85_02485	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component system sensor protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.964
AJC44800.1	AJC46341.1	SB85_02490	SB85_11790	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.768
AJC44800.1	AJC47622.1	SB85_02490	SB85_11795	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.706
AJC45610.1	AJC44481.1	SB85_07305	SB85_00490	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.906
AJC45610.1	AJC44799.1	SB85_07305	SB85_02485	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component system sensor protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.795
AJC45610.1	AJC46341.1	SB85_07305	SB85_11790	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.700