STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
virB11Type IV secretion system energizing component VirB11; Part of the Type IV secretion system. Belongs to the GSP E family. (347 aa)    
Predicted Functional Partners:
AJC45105.1
Type IV secretory pathway, VirB9 component; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.990
AJC45104.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.984
AJC45107.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.832
AJC47497.1
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.792
AJC46729.1
Type II secretion protein F; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.780
AJC46728.1
Type II secretion protein F; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.777
AJC46730.1
Pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.767
AJC46727.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.702
AJC45102.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.686
AJC47492.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.494
Your Current Organism:
Xanthomonas sacchari
NCBI taxonomy Id: 56458
Other names: CFBP 4641, ICMP 16916, LMG 471, LMG:471, X. sacchari
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