Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
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[Homology]
Score
AJC45115.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (792 aa)    
Predicted Functional Partners:
AJC45441.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.604
AJC45525.1
Peptidase M61; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.585
AJC44435.1
Ferric enterobactin receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.582
AJC47674.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.579
AJC47647.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.576
AJC44539.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.575
AJC44434.1
Ligand-gated channel; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.572
AJC45385.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.570
AJC46417.1
Peptidase M61; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.548
AJC46900.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.510
Your Current Organism:
Xanthomonas sacchari
NCBI taxonomy Id: 56458
Other names: CFBP 4641, ICMP 16916, LMG 471, LMG:471, X. sacchari
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