AJC45159.1 protein (Xanthomonas sacchari) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AJC45159.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (98 aa)

Predicted Functional Partners:

AJC47504.1

0.561

AJC45157.1

0.561

fdhD

0.561

AJC45156.1

0.421

Your Current Organism:

Xanthomonas sacchari

NCBI taxonomy Id: 56458
Other names: CFBP 4641, ICMP 16916, LMG 471, LMG:471, X. sacchari

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJC45156.1	AJC45157.1	SB85_04690	SB85_04700	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	CbbBc protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.571
AJC45156.1	AJC45159.1	SB85_04690	SB85_04710	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.421
AJC45156.1	AJC47504.1	SB85_04690	SB85_04695	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.563
AJC45156.1	fdhD	SB85_04690	SB85_04705	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Formate dehydrogenase; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.	0.563
AJC45157.1	AJC45156.1	SB85_04700	SB85_04690	CbbBc protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.571
AJC45157.1	AJC45159.1	SB85_04700	SB85_04710	CbbBc protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.561
AJC45157.1	AJC47504.1	SB85_04700	SB85_04695	CbbBc protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.875
AJC45157.1	fdhD	SB85_04700	SB85_04705	CbbBc protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	Formate dehydrogenase; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.	0.978
AJC45159.1	AJC45156.1	SB85_04710	SB85_04690	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.421
AJC45159.1	AJC45157.1	SB85_04710	SB85_04700	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	CbbBc protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.561
AJC45159.1	AJC47504.1	SB85_04710	SB85_04695	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.561
AJC45159.1	fdhD	SB85_04710	SB85_04705	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Formate dehydrogenase; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.	0.561
AJC47504.1	AJC45156.1	SB85_04695	SB85_04690	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.563
AJC47504.1	AJC45157.1	SB85_04695	SB85_04700	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	CbbBc protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.875
AJC47504.1	AJC45159.1	SB85_04695	SB85_04710	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.561
AJC47504.1	fdhD	SB85_04695	SB85_04705	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Formate dehydrogenase; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.	0.795
fdhD	AJC45156.1	SB85_04705	SB85_04690	Formate dehydrogenase; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.563
fdhD	AJC45157.1	SB85_04705	SB85_04700	Formate dehydrogenase; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.	CbbBc protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.978
fdhD	AJC45159.1	SB85_04705	SB85_04710	Formate dehydrogenase; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.561
fdhD	AJC47504.1	SB85_04705	SB85_04695	Formate dehydrogenase; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.795