AJC45213.1 protein (Xanthomonas sacchari) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AJC45213.1

Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (358 aa)

Predicted Functional Partners:

AJC44707.1

0.854

AJC46922.1

0.843

AJC44577.1

0.840

AJC45054.1

0.832

AJC45011.1

0.829

AJC45302.1

0.829

AJC45432.1

0.823

AJC44974.1

0.817

AJC46534.1

0.784

AJC44636.1

0.679

Your Current Organism:

Xanthomonas sacchari

NCBI taxonomy Id: 56458
Other names: CFBP 4641, ICMP 16916, LMG 471, LMG:471, X. sacchari

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJC44577.1	AJC44636.1	SB85_01105	SB85_01470	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cation tolerance protein CutA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.727
AJC44577.1	AJC44707.1	SB85_01105	SB85_01945	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	c-di-GMP phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.890
AJC44577.1	AJC44974.1	SB85_01105	SB85_03540	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.792
AJC44577.1	AJC45011.1	SB85_01105	SB85_03745	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.542
AJC44577.1	AJC45054.1	SB85_01105	SB85_03985	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.813
AJC44577.1	AJC45213.1	SB85_01105	SB85_05040	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.840
AJC44577.1	AJC45302.1	SB85_01105	SB85_05575	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.559
AJC44577.1	AJC45432.1	SB85_01105	SB85_06335	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.543
AJC44577.1	AJC46534.1	SB85_01105	SB85_12985	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Signaling protein ykoW; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.843
AJC44577.1	AJC46922.1	SB85_01105	SB85_15445	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.726
AJC44636.1	AJC44577.1	SB85_01470	SB85_01105	Cation tolerance protein CutA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.727
AJC44636.1	AJC44707.1	SB85_01470	SB85_01945	Cation tolerance protein CutA; Derived by automated computational analysis using gene prediction method: Protein Homology.	c-di-GMP phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.739
AJC44636.1	AJC44974.1	SB85_01470	SB85_03540	Cation tolerance protein CutA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.672
AJC44636.1	AJC45011.1	SB85_01470	SB85_03745	Cation tolerance protein CutA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.494
AJC44636.1	AJC45054.1	SB85_01470	SB85_03985	Cation tolerance protein CutA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.568
AJC44636.1	AJC45213.1	SB85_01470	SB85_05040	Cation tolerance protein CutA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.679
AJC44636.1	AJC45302.1	SB85_01470	SB85_05575	Cation tolerance protein CutA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.495
AJC44636.1	AJC45432.1	SB85_01470	SB85_06335	Cation tolerance protein CutA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.513
AJC44636.1	AJC46534.1	SB85_01470	SB85_12985	Cation tolerance protein CutA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Signaling protein ykoW; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.680
AJC44636.1	AJC46922.1	SB85_01470	SB85_15445	Cation tolerance protein CutA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.536