AJC45411.1 protein (Xanthomonas sacchari) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

AJC45411.1

Chromosome partitioning protein ParA; Derived by automated computational analysis using gene prediction method: Protein Homology. (289 aa)

Predicted Functional Partners:

AJC45412.1

0.995

AJC45410.1

0.971

AJC45414.1

0.958

AJC45415.1

0.941

AJC45413.1

0.898

AJC45409.1

0.878

AJC46380.1

0.568

AJC46896.1

0.484

AJC46111.1

0.458

AJC45001.1

0.438

Your Current Organism:

Xanthomonas sacchari

NCBI taxonomy Id: 56458
Other names: CFBP 4641, ICMP 16916, LMG 471, LMG:471, X. sacchari

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJC45001.1	AJC45410.1	SB85_03695	SB85_06215	Deoxyribodipyrimidine photolyase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DNA photolyase family.	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.542
AJC45001.1	AJC45411.1	SB85_03695	SB85_06220	Deoxyribodipyrimidine photolyase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DNA photolyase family.	Chromosome partitioning protein ParA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.438
AJC45001.1	AJC45414.1	SB85_03695	SB85_06235	Deoxyribodipyrimidine photolyase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DNA photolyase family.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.429
AJC45001.1	AJC46111.1	SB85_03695	SB85_10325	Deoxyribodipyrimidine photolyase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DNA photolyase family.	Fasciclin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.433
AJC45001.1	AJC46380.1	SB85_03695	SB85_12055	Deoxyribodipyrimidine photolyase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DNA photolyase family.	Deoxyribodipyrimidine photolyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.637
AJC45409.1	AJC45410.1	SB85_06210	SB85_06215	stearoyl-CoA 9-desaturase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.855
AJC45409.1	AJC45411.1	SB85_06210	SB85_06220	stearoyl-CoA 9-desaturase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chromosome partitioning protein ParA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.878
AJC45409.1	AJC45412.1	SB85_06210	SB85_06225	stearoyl-CoA 9-desaturase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cyclopropane-fatty-acyl-phospholipid synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.871
AJC45409.1	AJC45413.1	SB85_06210	SB85_06230	stearoyl-CoA 9-desaturase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.822
AJC45409.1	AJC45414.1	SB85_06210	SB85_06235	stearoyl-CoA 9-desaturase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.853
AJC45409.1	AJC45415.1	SB85_06210	SB85_06240	stearoyl-CoA 9-desaturase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cyclopropane-fatty-acyl-phospholipid synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.854
AJC45410.1	AJC45001.1	SB85_06215	SB85_03695	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Deoxyribodipyrimidine photolyase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DNA photolyase family.	0.542
AJC45410.1	AJC45409.1	SB85_06215	SB85_06210	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	stearoyl-CoA 9-desaturase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.855
AJC45410.1	AJC45411.1	SB85_06215	SB85_06220	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chromosome partitioning protein ParA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.971
AJC45410.1	AJC45412.1	SB85_06215	SB85_06225	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cyclopropane-fatty-acyl-phospholipid synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
AJC45410.1	AJC45413.1	SB85_06215	SB85_06230	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.874
AJC45410.1	AJC45414.1	SB85_06215	SB85_06235	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.982
AJC45410.1	AJC45415.1	SB85_06215	SB85_06240	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cyclopropane-fatty-acyl-phospholipid synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.943
AJC45410.1	AJC46380.1	SB85_06215	SB85_12055	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Deoxyribodipyrimidine photolyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.568
AJC45411.1	AJC45001.1	SB85_06220	SB85_03695	Chromosome partitioning protein ParA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Deoxyribodipyrimidine photolyase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DNA photolyase family.	0.438