AJC45458.1 protein (Xanthomonas sacchari) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

AJC45458.1

Phosphoesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (216 aa)

Predicted Functional Partners:

AJC45457.1

0.962

AJC45455.1

0.959

AJC45456.1

0.959

AJC45454.1

0.540

ligD

0.439

Your Current Organism:

Xanthomonas sacchari

NCBI taxonomy Id: 56458
Other names: CFBP 4641, ICMP 16916, LMG 471, LMG:471, X. sacchari

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJC45454.1	AJC45455.1	SB85_06460	SB85_06465	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	mRNA 3'-end processing factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.560
AJC45454.1	AJC45456.1	SB85_06460	SB85_06470	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-dependent DNA ligase; Catalyzes the ATP-dependent formation of a phosphodiester at the site of a single strand break in duplex DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.540
AJC45454.1	AJC45457.1	SB85_06460	SB85_06475	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.540
AJC45454.1	AJC45458.1	SB85_06460	SB85_06480	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphoesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.540
AJC45455.1	AJC45454.1	SB85_06465	SB85_06460	mRNA 3'-end processing factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.560
AJC45455.1	AJC45456.1	SB85_06465	SB85_06470	mRNA 3'-end processing factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-dependent DNA ligase; Catalyzes the ATP-dependent formation of a phosphodiester at the site of a single strand break in duplex DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
AJC45455.1	AJC45457.1	SB85_06465	SB85_06475	mRNA 3'-end processing factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.958
AJC45455.1	AJC45458.1	SB85_06465	SB85_06480	mRNA 3'-end processing factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphoesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.959
AJC45455.1	ligD	SB85_06465	SB85_13470	mRNA 3'-end processing factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-dependent DNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.675
AJC45456.1	AJC45454.1	SB85_06470	SB85_06460	ATP-dependent DNA ligase; Catalyzes the ATP-dependent formation of a phosphodiester at the site of a single strand break in duplex DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.540
AJC45456.1	AJC45455.1	SB85_06470	SB85_06465	ATP-dependent DNA ligase; Catalyzes the ATP-dependent formation of a phosphodiester at the site of a single strand break in duplex DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.	mRNA 3'-end processing factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
AJC45456.1	AJC45457.1	SB85_06470	SB85_06475	ATP-dependent DNA ligase; Catalyzes the ATP-dependent formation of a phosphodiester at the site of a single strand break in duplex DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.	DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.957
AJC45456.1	AJC45458.1	SB85_06470	SB85_06480	ATP-dependent DNA ligase; Catalyzes the ATP-dependent formation of a phosphodiester at the site of a single strand break in duplex DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphoesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.959
AJC45457.1	AJC45454.1	SB85_06475	SB85_06460	DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.540
AJC45457.1	AJC45455.1	SB85_06475	SB85_06465	DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	mRNA 3'-end processing factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.958
AJC45457.1	AJC45456.1	SB85_06475	SB85_06470	DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-dependent DNA ligase; Catalyzes the ATP-dependent formation of a phosphodiester at the site of a single strand break in duplex DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.957
AJC45457.1	AJC45458.1	SB85_06475	SB85_06480	DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphoesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.962
AJC45457.1	ligD	SB85_06475	SB85_13470	DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-dependent DNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.492
AJC45458.1	AJC45454.1	SB85_06480	SB85_06460	Phosphoesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.540
AJC45458.1	AJC45455.1	SB85_06480	SB85_06465	Phosphoesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	mRNA 3'-end processing factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.959