Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AJC45567.1Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (123 aa)    
Predicted Functional Partners:
AJC45568.1
Polyketide cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.836
AJC44905.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.635
AJC44901.1
Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.615
AJC46343.1
Ankyrin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.588
AJC45654.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.587
rlmM
23S rRNA methyltransferase; Catalyzes the 2'-O-methylation at nucleotide C2498 in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily.
 
  
 0.587
AJC44878.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.551
AJC46633.1
Adenylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.532
AJC45244.1
Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.519
AJC47230.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.519
Your Current Organism:
Xanthomonas sacchari
NCBI taxonomy Id: 56458
Other names: CFBP 4641, ICMP 16916, LMG 471, LMG:471, X. sacchari
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