Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AJC45579.1Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (553 aa)    
Predicted Functional Partners:
AJC45578.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.930
AJC47139.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.901
AJC45852.1
DeoR faimly transcriptional regulator; Recycling of diacylglycerol produced during the turnover of membrane phospholipid.
 
   
 0.564
AJC45580.1
Peptidase M20; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.496
AJC45576.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.450
lptD
Organic solvent tolerance protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.
  
   
 0.443
AJC46153.1
Lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.441
AJC45577.1
Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.408
AJC47241.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.405
Your Current Organism:
Xanthomonas sacchari
NCBI taxonomy Id: 56458
Other names: CFBP 4641, ICMP 16916, LMG 471, LMG:471, X. sacchari
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