STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJC45607.1Membane protease HflC; HflC and HflK could regulate a protease. (288 aa)    
Predicted Functional Partners:
hflK
Membrane protein; HflC and HflK could encode or regulate a protease.
 
 
 0.999
AJC45606.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.573
engB
GTP-binding protein; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family.
  
    0.554
AJC45609.1
Quinone oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.548
bamB
Lipoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
   0.493
AJC44528.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.481
dnaK
Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
   
 0.468
AJC45138.1
Magnesium transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.459
yidC
Insertase; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.
 
 
 0.459
AJC46137.1
Peptidase M16; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.435
Your Current Organism:
Xanthomonas sacchari
NCBI taxonomy Id: 56458
Other names: CFBP 4641, ICMP 16916, LMG 471, LMG:471, X. sacchari
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