AJC45653.1 protein (Xanthomonas sacchari) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

AJC45653.1

Glycosyl transferase family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (328 aa)

Predicted Functional Partners:

AJC45654.1

0.530

AJC46004.1

0.519

AJC47542.1

0.489

AJC45081.1

0.480

AJC46345.1

0.449

AJC46005.1

0.409

Your Current Organism:

Xanthomonas sacchari

NCBI taxonomy Id: 56458
Other names: CFBP 4641, ICMP 16916, LMG 471, LMG:471, X. sacchari

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJC45081.1	AJC45653.1	SB85_04190	SB85_07555	Polysaccharide biosynthesis protein GumD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.480
AJC45081.1	AJC46004.1	SB85_04190	SB85_09685	Polysaccharide biosynthesis protein GumD; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.574
AJC45081.1	AJC46005.1	SB85_04190	SB85_09690	Polysaccharide biosynthesis protein GumD; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.576
AJC45081.1	AJC46345.1	SB85_04190	SB85_11830	Polysaccharide biosynthesis protein GumD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dolichyl-phosphate mannose synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.552
AJC45081.1	AJC47542.1	SB85_04190	SB85_07550	Polysaccharide biosynthesis protein GumD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.480
AJC45653.1	AJC45081.1	SB85_07555	SB85_04190	Glycosyl transferase family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polysaccharide biosynthesis protein GumD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.480
AJC45653.1	AJC45654.1	SB85_07555	SB85_07560	Glycosyl transferase family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.530
AJC45653.1	AJC46004.1	SB85_07555	SB85_09685	Glycosyl transferase family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.519
AJC45653.1	AJC46005.1	SB85_07555	SB85_09690	Glycosyl transferase family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.409
AJC45653.1	AJC46345.1	SB85_07555	SB85_11830	Glycosyl transferase family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dolichyl-phosphate mannose synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.449
AJC45653.1	AJC47542.1	SB85_07555	SB85_07550	Glycosyl transferase family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.489
AJC45654.1	AJC45653.1	SB85_07560	SB85_07555	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.530
AJC46004.1	AJC45081.1	SB85_09685	SB85_04190	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polysaccharide biosynthesis protein GumD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.574
AJC46004.1	AJC45653.1	SB85_09685	SB85_07555	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.519
AJC46004.1	AJC46005.1	SB85_09685	SB85_09690	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AJC46005.1	AJC45081.1	SB85_09690	SB85_04190	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polysaccharide biosynthesis protein GumD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.576
AJC46005.1	AJC45653.1	SB85_09690	SB85_07555	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.409
AJC46005.1	AJC46004.1	SB85_09690	SB85_09685	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AJC46345.1	AJC45081.1	SB85_11830	SB85_04190	Dolichyl-phosphate mannose synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polysaccharide biosynthesis protein GumD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.552
AJC46345.1	AJC45653.1	SB85_11830	SB85_07555	Dolichyl-phosphate mannose synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.449