Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AJC45658.1Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (172 aa)    
Predicted Functional Partners:
AJC45655.1
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.834
AJC45656.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.834
AJC45657.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.834
AJC45654.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.666
smg
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Smg family.
  
     0.642
AJC45380.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.477
AJC46344.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.411
lptE
Lipoprotein; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane; Belongs to the LptE lipoprotein family.
  
     0.401
Your Current Organism:
Xanthomonas sacchari
NCBI taxonomy Id: 56458
Other names: CFBP 4641, ICMP 16916, LMG 471, LMG:471, X. sacchari
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