STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJC45710.1Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (365 aa)    
Predicted Functional Partners:
AJC46755.1
TolB-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.635
tolB
Translocation protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.608
AJC45244.1
Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.602
AJC45666.1
Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.592
btuB
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.562
AJC46244.1
Haloacid dehalogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.552
AJC46796.1
Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.551
AJC47055.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.551
AJC45956.1
General secretion pathway protein GspJ; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.537
AJC44484.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.530
Your Current Organism:
Xanthomonas sacchari
NCBI taxonomy Id: 56458
Other names: CFBP 4641, ICMP 16916, LMG 471, LMG:471, X. sacchari
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