AJC45719.1 protein (Xanthomonas sacchari) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

AJC45719.1

Cell wall hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (153 aa)

Predicted Functional Partners:

AJC44901.1

0.690

AJC47140.1

0.684

AJC47230.1

0.680

AJC46343.1

0.630

AJC45954.1

0.615

AJC45034.1

0.597

AJC46633.1

0.559

AJC45720.1

0.556

tolA

0.555

AJC45014.1

0.554

Your Current Organism:

Xanthomonas sacchari

NCBI taxonomy Id: 56458
Other names: CFBP 4641, ICMP 16916, LMG 471, LMG:471, X. sacchari

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJC44901.1	AJC45014.1	SB85_03105	SB85_03760	Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidoglycan-associated outer membrane lipoprotein precursor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.690
AJC44901.1	AJC45034.1	SB85_03105	SB85_03870	Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.750
AJC44901.1	AJC45719.1	SB85_03105	SB85_07995	Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cell wall hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.690
AJC44901.1	AJC45954.1	SB85_03105	SB85_09415	Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	General secretion pathway protein GspM; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.751
AJC44901.1	AJC46343.1	SB85_03105	SB85_11810	Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ankyrin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.789
AJC44901.1	AJC46633.1	SB85_03105	SB85_13640	Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Adenylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.797
AJC44901.1	AJC47140.1	SB85_03105	SB85_16730	Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0250 family.	0.756
AJC44901.1	AJC47230.1	SB85_03105	SB85_17235	Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.770
AJC44901.1	tolA	SB85_03105	SB85_00325	Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein TolA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.761
AJC45014.1	AJC44901.1	SB85_03760	SB85_03105	Peptidoglycan-associated outer membrane lipoprotein precursor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.690
AJC45014.1	AJC45034.1	SB85_03760	SB85_03870	Peptidoglycan-associated outer membrane lipoprotein precursor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.467
AJC45014.1	AJC45719.1	SB85_03760	SB85_07995	Peptidoglycan-associated outer membrane lipoprotein precursor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cell wall hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.554
AJC45014.1	AJC46343.1	SB85_03760	SB85_11810	Peptidoglycan-associated outer membrane lipoprotein precursor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ankyrin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.601
AJC45014.1	AJC46633.1	SB85_03760	SB85_13640	Peptidoglycan-associated outer membrane lipoprotein precursor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Adenylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.567
AJC45014.1	AJC47140.1	SB85_03760	SB85_16730	Peptidoglycan-associated outer membrane lipoprotein precursor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0250 family.	0.693
AJC45014.1	AJC47230.1	SB85_03760	SB85_17235	Peptidoglycan-associated outer membrane lipoprotein precursor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.561
AJC45014.1	tolA	SB85_03760	SB85_00325	Peptidoglycan-associated outer membrane lipoprotein precursor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein TolA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.580
AJC45034.1	AJC44901.1	SB85_03870	SB85_03105	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.750
AJC45034.1	AJC45014.1	SB85_03870	SB85_03760	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidoglycan-associated outer membrane lipoprotein precursor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.467
AJC45034.1	AJC45719.1	SB85_03870	SB85_07995	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cell wall hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.597