STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJC45729.1Ricin B lectin; Derived by automated computational analysis using gene prediction method: Protein Homology. (711 aa)    
Predicted Functional Partners:
AJC45104.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.569
AJC47254.1
Ion channel; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.560
AJC46851.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.513
AJC47195.1
Cellulase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 12 (cellulase H) family.
  
     0.481
AJC46598.1
Flagellar motor protein MotB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.475
AJC46157.1
Xylanase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 30 family.
  
   
 0.466
AJC44484.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.452
AJC47440.1
Alpha-xylosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 31 family.
  
     0.429
AJC47146.1
Arabinogalactan endo-1,4-beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.411
AJC45976.1
Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.410
Your Current Organism:
Xanthomonas sacchari
NCBI taxonomy Id: 56458
Other names: CFBP 4641, ICMP 16916, LMG 471, LMG:471, X. sacchari
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