STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJC45733.1Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (294 aa)    
Predicted Functional Partners:
AJC47328.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.564
AJC45732.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.511
AJC47327.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.468
AJC46546.1
Lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.447
AJC46770.1
Acid phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.432
AJC47078.1
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.402
AJC46695.1
feruloyl-CoA synthase; Catalyzes the conversion of ferulic acid to feruloyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.400
Your Current Organism:
Xanthomonas sacchari
NCBI taxonomy Id: 56458
Other names: CFBP 4641, ICMP 16916, LMG 471, LMG:471, X. sacchari
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