Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AJC45880.1Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family. (462 aa)    
Predicted Functional Partners:
AJC45881.1
Sulfotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.882
AJC45882.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.801
AJC47388.1
Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.754
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
    
 0.742
AJC46769.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 
 0.696
AJC47066.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.594
AJC46078.1
NADH oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.531
AJC44772.1
Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.492
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.489
AJC45460.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.462
Your Current Organism:
Xanthomonas sacchari
NCBI taxonomy Id: 56458
Other names: CFBP 4641, ICMP 16916, LMG 471, LMG:471, X. sacchari
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