Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AJC45959.1General secretion pathway protein GspF; Derived by automated computational analysis using gene prediction method: Protein Homology. (404 aa)    
Predicted Functional Partners:
gspE
General secretion pathway protein GspE; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 
 0.974
AJC46395.1
Type II secretion system protein E; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.938
pilB
General secretion pathway protein GspE; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.935
gspG
General secretion pathway protein GspG; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.929
gspD
General secretion pathway protein GspD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.902
AJC47404.1
Methyltransferase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.895
AJC46018.1
Twitching motility protein PilT; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.832
AJC45957.1
General secretion pathway protein GspI; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.807
AJC47317.1
Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.733
AJC47313.1
Pilus assembly protein PilM; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.695
Your Current Organism:
Xanthomonas sacchari
NCBI taxonomy Id: 56458
Other names: CFBP 4641, ICMP 16916, LMG 471, LMG:471, X. sacchari
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