AJC47566.1 protein (Xanthomonas sacchari) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

AJC47566.1

Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (290 aa)

Predicted Functional Partners:

AJC46017.1

0.793

AJC44901.1

0.775

AJC44905.1

0.771

AJC45014.1

0.756

AJC44878.1

0.755

AJC46633.1

0.747

AJC46393.1

0.746

tolA

0.741

AJC46486.1

0.739

AJC45568.1

0.736

Your Current Organism:

Xanthomonas sacchari

NCBI taxonomy Id: 56458
Other names: CFBP 4641, ICMP 16916, LMG 471, LMG:471, X. sacchari

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJC44878.1	AJC44901.1	SB85_02960	SB85_03105	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.791
AJC44878.1	AJC44905.1	SB85_02960	SB85_03130	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.764
AJC44878.1	AJC45014.1	SB85_02960	SB85_03760	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidoglycan-associated outer membrane lipoprotein precursor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.406
AJC44878.1	AJC45568.1	SB85_02960	SB85_07080	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.669
AJC44878.1	AJC46393.1	SB85_02960	SB85_12125	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.753
AJC44878.1	AJC46486.1	SB85_02960	SB85_12655	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.646
AJC44878.1	AJC46633.1	SB85_02960	SB85_13640	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Adenylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.649
AJC44878.1	AJC47566.1	SB85_02960	SB85_09765	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.755
AJC44901.1	AJC44878.1	SB85_03105	SB85_02960	Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.791
AJC44901.1	AJC44905.1	SB85_03105	SB85_03130	Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.795
AJC44901.1	AJC45014.1	SB85_03105	SB85_03760	Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidoglycan-associated outer membrane lipoprotein precursor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.690
AJC44901.1	AJC45568.1	SB85_03105	SB85_07080	Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.759
AJC44901.1	AJC46393.1	SB85_03105	SB85_12125	Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.707
AJC44901.1	AJC46486.1	SB85_03105	SB85_12655	Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.750
AJC44901.1	AJC46633.1	SB85_03105	SB85_13640	Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Adenylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.797
AJC44901.1	AJC47566.1	SB85_03105	SB85_09765	Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.775
AJC44901.1	tolA	SB85_03105	SB85_00325	Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein TolA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.761
AJC44905.1	AJC44878.1	SB85_03130	SB85_02960	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.764
AJC44905.1	AJC44901.1	SB85_03130	SB85_03105	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.795
AJC44905.1	AJC45014.1	SB85_03130	SB85_03760	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidoglycan-associated outer membrane lipoprotein precursor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.668