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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJC46038.1Copper resistance protein CopB; Derived by automated computational analysis using gene prediction method: Protein Homology. (399 aa)    
Predicted Functional Partners:
AJC46037.1
Copper oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.993
AJC46035.1
MerR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.554
AJC46039.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.524
AJC46036.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.504
AJC46033.1
Copper chaperone; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.486
AJC46034.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.483
AJC46430.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.404
Your Current Organism:
Xanthomonas sacchari
NCBI taxonomy Id: 56458
Other names: CFBP 4641, ICMP 16916, LMG 471, LMG:471, X. sacchari
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