AJC46092.1 protein (Xanthomonas sacchari) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

AJC46092.1

Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (190 aa)

Predicted Functional Partners:

AJC46495.1

0.705

AJC45728.1

0.696

AJC45040.1

0.632

AJC46486.1

0.627

AJC46465.1

0.601

AJC46887.1

0.566

AJC47255.1

0.546

AJC47647.1

0.536

AJC46743.1

0.503

AJC46091.1

0.499

Your Current Organism:

Xanthomonas sacchari

NCBI taxonomy Id: 56458
Other names: CFBP 4641, ICMP 16916, LMG 471, LMG:471, X. sacchari

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJC45040.1	AJC45728.1	SB85_03905	SB85_08050	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.738
AJC45040.1	AJC46092.1	SB85_03905	SB85_10220	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.632
AJC45040.1	AJC46465.1	SB85_03905	SB85_12525	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Calcium-dependent protein kinase 21; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.728
AJC45040.1	AJC46486.1	SB85_03905	SB85_12655	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.444
AJC45040.1	AJC46743.1	SB85_03905	SB85_14320	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Energy transducer TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.	0.470
AJC45040.1	AJC47255.1	SB85_03905	SB85_17375	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.751
AJC45728.1	AJC45040.1	SB85_08050	SB85_03905	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.738
AJC45728.1	AJC46092.1	SB85_08050	SB85_10220	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.696
AJC45728.1	AJC46465.1	SB85_08050	SB85_12525	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Calcium-dependent protein kinase 21; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.596
AJC45728.1	AJC47255.1	SB85_08050	SB85_17375	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.715
AJC46091.1	AJC46092.1	SB85_10215	SB85_10220	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.499
AJC46092.1	AJC45040.1	SB85_10220	SB85_03905	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.632
AJC46092.1	AJC45728.1	SB85_10220	SB85_08050	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.696
AJC46092.1	AJC46091.1	SB85_10220	SB85_10215	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.499
AJC46092.1	AJC46465.1	SB85_10220	SB85_12525	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Calcium-dependent protein kinase 21; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.601
AJC46092.1	AJC46486.1	SB85_10220	SB85_12655	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.627
AJC46092.1	AJC46495.1	SB85_10220	SB85_12705	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	2OG-Fe(II) oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.705
AJC46092.1	AJC46743.1	SB85_10220	SB85_14320	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Energy transducer TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.	0.503
AJC46092.1	AJC46887.1	SB85_10220	SB85_15235	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.566
AJC46092.1	AJC47255.1	SB85_10220	SB85_17375	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.546