Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
AJC46112.1DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (480 aa)    
Predicted Functional Partners:
AJC46218.1
uracil-DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.900
AJC46113.1
Biotin synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.843
AJC46096.1
Host attachment protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.584
AJC46852.1
Peptidase M23; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.508
AJC45443.1
General stress protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.466
AJC46607.1
DNA topoisomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.466
tsaB
Glycoprotease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.444
AJC44702.1
Flagellar basal body rod protein FlgC; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the flagella basal body rod proteins family.
    
   0.418
Your Current Organism:
Xanthomonas sacchari
NCBI taxonomy Id: 56458
Other names: CFBP 4641, ICMP 16916, LMG 471, LMG:471, X. sacchari
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