AJC46273.1 protein (Xanthomonas sacchari) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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co-expression

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gene fusions

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[Homology]

Score

AJC46273.1

Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (385 aa)

Predicted Functional Partners:

AJC46272.1

0.972

AJC46270.1

0.831

AJC46274.1

0.812

AJC46043.1

0.720

AJC47569.1

0.642

AJC46046.1

0.614

AJC46050.1

0.612

AJC45619.1

0.610

AJC46049.1

0.601

AJC46051.1

0.597

Your Current Organism:

Xanthomonas sacchari

NCBI taxonomy Id: 56458
Other names: CFBP 4641, ICMP 16916, LMG 471, LMG:471, X. sacchari

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJC45619.1	AJC46046.1	SB85_07355	SB85_09930	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
AJC45619.1	AJC46049.1	SB85_07355	SB85_09950	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.717
AJC45619.1	AJC46050.1	SB85_07355	SB85_09960	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.775
AJC45619.1	AJC46051.1	SB85_07355	SB85_09965	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.765
AJC45619.1	AJC46270.1	SB85_07355	SB85_11340	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acriflavin resistance protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.472
AJC45619.1	AJC46273.1	SB85_07355	SB85_11355	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.610
AJC45619.1	AJC46274.1	SB85_07355	SB85_11360	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.672
AJC45619.1	AJC47569.1	SB85_07355	SB85_09955	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.726
AJC46043.1	AJC46046.1	SB85_09910	SB85_09930	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.870
AJC46043.1	AJC46049.1	SB85_09910	SB85_09950	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.864
AJC46043.1	AJC46050.1	SB85_09910	SB85_09960	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.882
AJC46043.1	AJC46051.1	SB85_09910	SB85_09965	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.870
AJC46043.1	AJC46270.1	SB85_09910	SB85_11340	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acriflavin resistance protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.503
AJC46043.1	AJC46273.1	SB85_09910	SB85_11355	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.720
AJC46043.1	AJC46274.1	SB85_09910	SB85_11360	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.767
AJC46043.1	AJC47569.1	SB85_09910	SB85_09955	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.863
AJC46046.1	AJC45619.1	SB85_09930	SB85_07355	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
AJC46046.1	AJC46043.1	SB85_09930	SB85_09910	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.870
AJC46046.1	AJC46050.1	SB85_09930	SB85_09960	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.774
AJC46046.1	AJC46270.1	SB85_09930	SB85_11340	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acriflavin resistance protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.748