Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
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[Homology]
Score
AJC46398.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (526 aa)    
Predicted Functional Partners:
glyS
glycyl-tRNA synthetase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.780
AJC47041.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.657
AJC45345.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.618
AJC44417.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.582
AJC47634.1
2OG-Fe(II) oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.531
htpG
Heat shock protein 90; Molecular chaperone. Has ATPase activity.
   
 0.517
AJC45274.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.516
AJC45249.1
Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.491
AJC45177.1
Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.482
glyQ
glycyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.482
Your Current Organism:
Xanthomonas sacchari
NCBI taxonomy Id: 56458
Other names: CFBP 4641, ICMP 16916, LMG 471, LMG:471, X. sacchari
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