Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-expression
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[Homology]
Score
AJC46435.1Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (113 aa)    
Predicted Functional Partners:
AJC46436.1
Dolichol-phosphate mannosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.929
AJC47018.1
Dolichyl-phosphate-mannose-protein mannosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.656
AJC46437.1
Protein CapI; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.556
AJC47022.1
CDP-glycerol glycerophosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.551
AJC46441.1
Chromosome partitioning protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.480
AJC44917.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.474
AJC47566.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.467
AJC47596.1
XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.465
AJC47225.1
RstR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.447
AJC46227.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.446
Your Current Organism:
Xanthomonas sacchari
NCBI taxonomy Id: 56458
Other names: CFBP 4641, ICMP 16916, LMG 471, LMG:471, X. sacchari
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