Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
AJC47635.1Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (906 aa)    
Predicted Functional Partners:
AJC45345.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.789
mnmE
tRNA modification GTPase MnmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
       0.765
AJC45429.1
Heat shock protein Hsp70; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.750
AJC44678.1
O-antigen biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.735
AJC46090.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.732
AJC44781.1
Replication protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.707
AJC47118.1
MoxJ protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.707
AJC47041.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.705
AJC46590.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.674
AJC47564.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.659
Your Current Organism:
Xanthomonas sacchari
NCBI taxonomy Id: 56458
Other names: CFBP 4641, ICMP 16916, LMG 471, LMG:471, X. sacchari
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