mlaD protein (Xanthomonas sacchari) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

mlaD

Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (179 aa)

Predicted Functional Partners:

AJC46569.1

0.999

AJC46571.1

0.998

AJC46572.1

0.997

AJC46568.1

0.992

AJC45984.1

0.990

AJC45985.1

0.983

AJC46567.1

0.976

AJC45986.1

0.900

AJC46175.1

0.538

AJC44661.1

0.537

Your Current Organism:

Xanthomonas sacchari

NCBI taxonomy Id: 56458
Other names: CFBP 4641, ICMP 16916, LMG 471, LMG:471, X. sacchari

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJC44661.1	AJC45984.1	SB85_01625	SB85_09580	Anti-sigma factor antagonist; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.558
AJC44661.1	AJC45985.1	SB85_01625	SB85_09585	Anti-sigma factor antagonist; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.654
AJC44661.1	AJC45986.1	SB85_01625	SB85_09590	Anti-sigma factor antagonist; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.537
AJC44661.1	AJC46571.1	SB85_01625	SB85_13210	Anti-sigma factor antagonist; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.558
AJC44661.1	AJC46572.1	SB85_01625	SB85_13215	Anti-sigma factor antagonist; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.654
AJC44661.1	mlaD	SB85_01625	SB85_13205	Anti-sigma factor antagonist; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.537
AJC45984.1	AJC44661.1	SB85_09580	SB85_01625	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Anti-sigma factor antagonist; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.558
AJC45984.1	AJC45985.1	SB85_09580	SB85_09585	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
AJC45984.1	AJC45986.1	SB85_09580	SB85_09590	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
AJC45984.1	AJC46175.1	SB85_09580	SB85_10745	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Anti-sigma F factor antagonist; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the anti-sigma-factor antagonist family.	0.558
AJC45984.1	AJC46568.1	SB85_09580	SB85_13195	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Anti-sigma B factor antagonist; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.924
AJC45984.1	AJC46569.1	SB85_09580	SB85_13200	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Organic solvent ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.897
AJC45984.1	AJC46571.1	SB85_09580	SB85_13210	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.926
AJC45984.1	AJC46572.1	SB85_09580	SB85_13215	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.991
AJC45984.1	mlaD	SB85_09580	SB85_13205	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
AJC45985.1	AJC44661.1	SB85_09585	SB85_01625	Iron ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Anti-sigma factor antagonist; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.654
AJC45985.1	AJC45984.1	SB85_09585	SB85_09580	Iron ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
AJC45985.1	AJC45986.1	SB85_09585	SB85_09590	Iron ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
AJC45985.1	AJC46175.1	SB85_09585	SB85_10745	Iron ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Anti-sigma F factor antagonist; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the anti-sigma-factor antagonist family.	0.654
AJC45985.1	AJC46568.1	SB85_09585	SB85_13195	Iron ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Anti-sigma B factor antagonist; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.961