AJC46583.1 protein (Xanthomonas sacchari) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

AJC46583.1

Lipase; Derived by automated computational analysis using gene prediction method: Protein Homology. (420 aa)

Predicted Functional Partners:

AJC47464.1

0.666

AJC47074.1

0.595

AJC45093.1

0.584

AJC45622.1

0.584

AJC46784.1

0.577

AJC45480.1

0.562

AJC45945.1

0.556

AJC46903.1

0.546

AJC44416.1

0.529

AJC46868.1

0.519

Your Current Organism:

Xanthomonas sacchari

NCBI taxonomy Id: 56458
Other names: CFBP 4641, ICMP 16916, LMG 471, LMG:471, X. sacchari

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJC44416.1	AJC45093.1	SB85_00090	SB85_04265	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Six-hairpin glycosidase-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.556
AJC44416.1	AJC45480.1	SB85_00090	SB85_06595	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.463
AJC44416.1	AJC45622.1	SB85_00090	SB85_07370	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.705
AJC44416.1	AJC45945.1	SB85_00090	SB85_09365	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.664
AJC44416.1	AJC46583.1	SB85_00090	SB85_13290	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.529
AJC44416.1	AJC46784.1	SB85_00090	SB85_14600	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 5 (cellulase A) family.	0.693
AJC44416.1	AJC46868.1	SB85_00090	SB85_15130	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dihydroneopterin aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.531
AJC44416.1	AJC46903.1	SB85_00090	SB85_15335	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.743
AJC44416.1	AJC47074.1	SB85_00090	SB85_16350	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.646
AJC44416.1	AJC47464.1	SB85_00090	SB85_02260	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.769
AJC45093.1	AJC44416.1	SB85_04265	SB85_00090	Six-hairpin glycosidase-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.556
AJC45093.1	AJC45480.1	SB85_04265	SB85_06595	Six-hairpin glycosidase-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.704
AJC45093.1	AJC45622.1	SB85_04265	SB85_07370	Six-hairpin glycosidase-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.493
AJC45093.1	AJC45945.1	SB85_04265	SB85_09365	Six-hairpin glycosidase-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.469
AJC45093.1	AJC46583.1	SB85_04265	SB85_13290	Six-hairpin glycosidase-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.584
AJC45093.1	AJC46784.1	SB85_04265	SB85_14600	Six-hairpin glycosidase-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 5 (cellulase A) family.	0.607
AJC45093.1	AJC46868.1	SB85_04265	SB85_15130	Six-hairpin glycosidase-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dihydroneopterin aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.568
AJC45093.1	AJC46903.1	SB85_04265	SB85_15335	Six-hairpin glycosidase-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.587
AJC45093.1	AJC47074.1	SB85_04265	SB85_16350	Six-hairpin glycosidase-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.642
AJC45093.1	AJC47464.1	SB85_04265	SB85_02260	Six-hairpin glycosidase-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.682