AJC46596.1 protein (Xanthomonas sacchari) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

AJC46596.1

Heme oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (199 aa)

Predicted Functional Partners:

AJC46597.1

0.937

AJC46595.1

0.469

AJC47559.1

0.452

AJC46312.1

0.436

AJC47464.1

0.433

AJC44416.1

0.415

Your Current Organism:

Xanthomonas sacchari

NCBI taxonomy Id: 56458
Other names: CFBP 4641, ICMP 16916, LMG 471, LMG:471, X. sacchari

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... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJC44416.1	AJC46312.1	SB85_00090	SB85_11610	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.465
AJC44416.1	AJC46596.1	SB85_00090	SB85_13360	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Heme oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.415
AJC44416.1	AJC47464.1	SB85_00090	SB85_02260	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.769
AJC44416.1	AJC47559.1	SB85_00090	SB85_08895	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.643
AJC46312.1	AJC44416.1	SB85_11610	SB85_00090	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.465
AJC46312.1	AJC46596.1	SB85_11610	SB85_13360	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Heme oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.436
AJC46312.1	AJC47464.1	SB85_11610	SB85_02260	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.676
AJC46312.1	AJC47559.1	SB85_11610	SB85_08895	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.410
AJC46595.1	AJC46596.1	SB85_13355	SB85_13360	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Heme oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.469
AJC46595.1	AJC46597.1	SB85_13355	SB85_13365	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phytochrome; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.469
AJC46596.1	AJC44416.1	SB85_13360	SB85_00090	Heme oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.415
AJC46596.1	AJC46312.1	SB85_13360	SB85_11610	Heme oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.436
AJC46596.1	AJC46595.1	SB85_13360	SB85_13355	Heme oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.469
AJC46596.1	AJC46597.1	SB85_13360	SB85_13365	Heme oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phytochrome; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.937
AJC46596.1	AJC47464.1	SB85_13360	SB85_02260	Heme oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.433
AJC46596.1	AJC47559.1	SB85_13360	SB85_08895	Heme oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.452
AJC46597.1	AJC46595.1	SB85_13365	SB85_13355	Phytochrome; Derived by automated computational analysis using gene prediction method: Protein Homology.	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.469
AJC46597.1	AJC46596.1	SB85_13365	SB85_13360	Phytochrome; Derived by automated computational analysis using gene prediction method: Protein Homology.	Heme oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.937
AJC47464.1	AJC44416.1	SB85_02260	SB85_00090	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.769
AJC47464.1	AJC46312.1	SB85_02260	SB85_11610	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.676