STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJC46648.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (139 aa)    
Predicted Functional Partners:
AJC45956.1
General secretion pathway protein GspJ; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.751
AJC46647.1
Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.725
AJC46465.1
Calcium-dependent protein kinase 21; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.708
AJC45244.1
Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.702
AJC46649.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.698
AJC45666.1
Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.674
AJC46646.1
uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.
 
     0.663
AJC44878.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.639
AJC46626.1
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.598
AJC46233.1
Response regulator receiver protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.588
Your Current Organism:
Xanthomonas sacchari
NCBI taxonomy Id: 56458
Other names: CFBP 4641, ICMP 16916, LMG 471, LMG:471, X. sacchari
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