Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AJC47680.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (484 aa)    
Predicted Functional Partners:
AJC46730.1
Pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.904
AJC46733.1
Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.899
AJC46728.1
Type II secretion protein F; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.872
AJC46729.1
Type II secretion protein F; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.870
AJC47678.1
Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.844
AJC46726.1
Pilus assembly protein TadE; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.800
AJC46727.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.787
virB11
Type IV secretion system energizing component VirB11; Part of the Type IV secretion system. Belongs to the GSP E family.
  
     0.453
Your Current Organism:
Xanthomonas sacchari
NCBI taxonomy Id: 56458
Other names: CFBP 4641, ICMP 16916, LMG 471, LMG:471, X. sacchari
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