AJC46792.1 protein (Xanthomonas sacchari) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

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Gene Fusion

Cooccurrence

Coexpression

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[Homology]

Score

AJC46792.1

Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (353 aa)

Predicted Functional Partners:

AJC46793.1

0.980

AJC46791.1

0.965

AJC46790.1

0.964

AJC46788.1

0.911

AJC46789.1

0.849

AJC46794.1

0.609

AJC47353.1

0.557

AJC45242.1

0.518

AJC45353.1

0.478

AJC45352.1

0.462

Your Current Organism:

Xanthomonas sacchari

NCBI taxonomy Id: 56458
Other names: CFBP 4641, ICMP 16916, LMG 471, LMG:471, X. sacchari

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJC45242.1	AJC46788.1	SB85_05215	SB85_14625	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.497
AJC45242.1	AJC46790.1	SB85_05215	SB85_14635	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.597
AJC45242.1	AJC46791.1	SB85_05215	SB85_14640	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.589
AJC45242.1	AJC46792.1	SB85_05215	SB85_14645	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.518
AJC45242.1	AJC46793.1	SB85_05215	SB85_14650	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.481
AJC45242.1	AJC47353.1	SB85_05215	SB85_17925	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.453
AJC45352.1	AJC45353.1	SB85_05875	SB85_05880	RDD family domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RDD family domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.435
AJC45352.1	AJC46790.1	SB85_05875	SB85_14635	RDD family domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.471
AJC45352.1	AJC46791.1	SB85_05875	SB85_14640	RDD family domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.511
AJC45352.1	AJC46792.1	SB85_05875	SB85_14645	RDD family domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.462
AJC45352.1	AJC47353.1	SB85_05875	SB85_17925	RDD family domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.410
AJC45353.1	AJC45352.1	SB85_05880	SB85_05875	RDD family domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RDD family domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.435
AJC45353.1	AJC46788.1	SB85_05880	SB85_14625	RDD family domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.412
AJC45353.1	AJC46790.1	SB85_05880	SB85_14635	RDD family domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.527
AJC45353.1	AJC46791.1	SB85_05880	SB85_14640	RDD family domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.576
AJC45353.1	AJC46792.1	SB85_05880	SB85_14645	RDD family domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.478
AJC45353.1	AJC47353.1	SB85_05880	SB85_17925	RDD family domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.420
AJC46788.1	AJC45242.1	SB85_14625	SB85_05215	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.497
AJC46788.1	AJC45353.1	SB85_14625	SB85_05880	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RDD family domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.412
AJC46788.1	AJC46789.1	SB85_14625	SB85_14630	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.833