Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AJC46851.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (220 aa)    
Predicted Functional Partners:
AJC47566.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.724
AJC46495.1
2OG-Fe(II) oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.723
tolA
Membrane protein TolA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.720
AJC44960.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.710
AJC44901.1
Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.697
AJC46375.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.691
AJC46042.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
    0.690
AJC47230.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.690
AJC45258.1
Lysine 6-aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
     0.686
AJC45954.1
General secretion pathway protein GspM; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.683
Your Current Organism:
Xanthomonas sacchari
NCBI taxonomy Id: 56458
Other names: CFBP 4641, ICMP 16916, LMG 471, LMG:471, X. sacchari
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