Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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[Homology]
Score
AJC46916.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (75 aa)    
Predicted Functional Partners:
AJC44937.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.555
AJC46914.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.510
AJC46915.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.510
AJC47571.1
Chorismate mutase; Catalyzes the Claisen rearrangement of chorismate to prephenate.
  
     0.505
AJC47459.1
Transglutaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.500
AJC45105.1
Type IV secretory pathway, VirB9 component; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.472
AJC45134.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.460
AJC45809.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.424
AJC45935.1
Cellulose synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.404
AJC45937.1
Cation tolerance protein CutA; Binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); Belongs to the AcsB/BcsB family.
  
     0.401
Your Current Organism:
Xanthomonas sacchari
NCBI taxonomy Id: 56458
Other names: CFBP 4641, ICMP 16916, LMG 471, LMG:471, X. sacchari
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