AJC47039.1 protein (Xanthomonas sacchari) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

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co-expression

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[Homology]

Score

AJC47039.1

XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (85 aa)

Predicted Functional Partners:

AJC47328.1

0.690

AJC47327.1

0.665

AJC47326.1

0.465

AJC46823.1

0.444

AJC44802.1

0.440

AJC47078.1

0.429

Your Current Organism:

Xanthomonas sacchari

NCBI taxonomy Id: 56458
Other names: CFBP 4641, ICMP 16916, LMG 471, LMG:471, X. sacchari

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJC44802.1	AJC47039.1	SB85_02500	SB85_16145	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.440
AJC46823.1	AJC47039.1	SB85_14820	SB85_16145	Hydrogenase expression protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.444
AJC46823.1	AJC47327.1	SB85_14820	SB85_17785	Hydrogenase expression protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.429
AJC47039.1	AJC44802.1	SB85_16145	SB85_02500	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.440
AJC47039.1	AJC46823.1	SB85_16145	SB85_14820	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrogenase expression protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.444
AJC47039.1	AJC47078.1	SB85_16145	SB85_16370	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.429
AJC47039.1	AJC47326.1	SB85_16145	SB85_17780	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.465
AJC47039.1	AJC47327.1	SB85_16145	SB85_17785	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.665
AJC47039.1	AJC47328.1	SB85_16145	SB85_17790	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.690
AJC47078.1	AJC47039.1	SB85_16370	SB85_16145	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.429
AJC47078.1	AJC47328.1	SB85_16370	SB85_17790	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.443
AJC47326.1	AJC47039.1	SB85_17780	SB85_16145	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.465
AJC47326.1	AJC47327.1	SB85_17780	SB85_17785	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.949
AJC47326.1	AJC47328.1	SB85_17780	SB85_17790	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.956
AJC47327.1	AJC46823.1	SB85_17785	SB85_14820	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrogenase expression protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.429
AJC47327.1	AJC47039.1	SB85_17785	SB85_16145	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.665
AJC47327.1	AJC47326.1	SB85_17785	SB85_17780	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.949
AJC47327.1	AJC47328.1	SB85_17785	SB85_17790	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.948
AJC47328.1	AJC47039.1	SB85_17790	SB85_16145	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.690
AJC47328.1	AJC47078.1	SB85_17790	SB85_16370	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.443